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BPG Computer Classroom: HEB 1st Floor, Room #127
Genomic Core Lab: HEB 2nd Floor, Room #200
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Phone: 419.383.6883
Fax: 419.383.3251
BPG Databases
Dr. Alexei Fedorov's lab can be seen here: http://bpg.utoledo.edu/~afedorov/lab/
The Exon-Intron Database
Shepelev V., Fedorov A. Advances in the Exon-Intron Database. Briefings in Bioinformatics 2006, 7: 178-185.
|
New Releases |
|||
| Species Name | EID | ||
| Human, build 37.1 | hs37p1.EID.tar.gz | ||
| Mouse, build 37.1 | mm37p1.EID.tar.gz | ||
| Cow, build 3.1 | Bt3p1.EID.tar.gz | ||
| Human, build 36.1 | hs36p1.EID.tar.gz | ||
| Mouse, build 36.1 | mm36p1.EID.tar.gz | ||
| Rat, build 4 | rn4p1.EID.tar.gz | ||
| Sea Urchin | Spur2p1.EID.tar.gz | ||
| Release of Exon-Intron Database, September 2005 | |||
| Species name | EID |
UID |
ILD |
| Human (GenBank 35.1) | hs35p1.EID.tar.gz | hs35p1.ILD.tar.gz | |
| Mouse (GenBank 34.1) | mm34p1.EID.tar.gz | mm34p1.UID.tar.gz | mm34p1.ILD.tar.gz |
| Rat (GenBank 3.1) | rn3p1.EID.tar.gz | rn3p1.UID.tar.gz | rn3p1.ILD.tar.gz |
| Dog (GenBank 2.1) | cfa2p1.EID.tar.gz | cfa2p1.UID.tar.gz | cfa2p1.ILD.tar.gz |
| Chicken (GenBank 1.1) | gga1p1.EID.tar.gz | gga1p1.UID.tar.gz | gga1p1.ILD.tar.gz |
| Danio rerio (release Zv4) | drzv4.EID.tar.gz | drzv4.UID.tar.gz | drzv4.ILD.tar.gz |
| C. elegans (GenBank 2003) | ce2003.EID.tar.gz | ce2003.UID.tar.gz | ce2003.ILD.tar.gz |
| D. melanogaster (4.1) | dm4p1.EID.tar.gz | dm4p1.UID.tar.gz | dm4p1.ILD.tar.gz |
| A. thaliana (2004) | at2004.EID.tar.gz | at2004.UID.tar.gz | at2004.ILD.tar.gz |
| gb149 (original EID) | gb149.EID.tar.gz | ||
| MOID release 2 |
September 2005 |
||
| Instructions | README_Sept05 | ||
|
MOID 3.0 (July 2010, DOMINO5 |
http://bpg.utoledo.edu/~aprakash/orthologous_introns.html |
Please cite the reference at the top of this page (Shepelev and Fedorov) when using
the Exon-Intron Database in your research.
README - Explanations about new releases of Exon-Intron Database (EID)
SNO.pl - This program searches for conserved structures characteristic for C/D box snoRNA
TARGETmrna.pl - This program searches for the targets of snoRNA antisense elements among all mRNA
sequences of human, mouse and rat
siRNA.pl - This program scans the entire set of human introns searching for stem-loop hairpin structures with perfect stems spanning at least 21 nucleotides and with short 0 to 80 nucleotides loops.
snoRNA.r3.pl - The latest version of snoRNA.pl
Questions or Comments:
Alexei Fedorov, Ph.D.
Associate Professor, Department of Medicine
Head of Bioinformatics Lab
University of Toledo Health Science Campus
3125 Transverse Dr.
Toledo, OH 43614Link to Alexei Fedorov home page
Phone: (419)-383-5270
Fax: (419)-383-3102
E -mail: alexei.fedorov@utoledo.edu
